Student Presentations

CSI 5180 - Machine Learning for Bioinformatics

Student Presentation

Students	Paper	DOI
James Couture	Li et al. (2023)	DOI
Ayman Fakri & Lanney Wang	Smith et al. (2024)	DOI
Stacy Guo & Lubing Yang	Afify and Zanaty (2021)	DOI

References

Afify, Heba M., and Muhammad S. Zanaty. 2021. “Computational predictions for protein sequences of COVID-19 virus via machine learning algorithms.” Medical & Biological Engineering & Computing 59 (9): 1723–34. https://doi.org/10.1007/s11517-021-02412-z.

Li, Ying, Hang Sun, Wensi Fang, Qin Ma, Siyu Han, Rui Wang-Sattler, Wei Du, and Qiong Yu. 2023. “SURE: Screening unlabeled samples for reliable negative samples based on reinforcement learning.” Information Sciences 629: 299–312. https://doi.org/10.1016/j.ins.2023.01.112.

Smith, Nathaniel, Xinyu Yuan, Chesney Melissinos, and Gaurav Moghe. 2024. “FuncFetch: an LLM-assisted workflow enables mining thousands of enzyme–substrate interactions from published manuscripts.” Bioinformatics 41 (1): btae756. https://doi.org/10.1093/bioinformatics/btae756.