``Biologists that reduce bioinformatics to simply "the
application of computers in biology" sometimes fail to recognize the
rich intellectual content of bioinformatics. Bioinformatics has
become a part of modern biology and often dictates new fashions,
enables new approaches, and drives further biological
developments.'' Jones
N.C. and Pevzner P. A. (2004) An
Introduction to Bioinformatics Algorithms. MIT Press, p. 77.
Laboratory members
- Professor
- Postdoctoral fellow
- Ph.D.
- Aseel Awdeh (Ph.D. September 2015- co-supervision
with Teodore Perkins)
-
Bhagya C Thimmappa (Ph.D. 2018/09- with Gertraud Burger, Université de Montréal)
Plant-microbe interacions at the
molecular level.
- M.C.S
-
Imane Chdaoui (M.C.S January 2016-)
-
Amirhossein Hajianpour (M.C.S September 2018-)
- 4th year students
- Alumni
-
Kevin Sutanto (M.C.S 2019-2021) RNA Sequence Classification using Secondary Structure Fingerprints, Sequence-Based Features, and Deep Learning
-
Sandrine Moreira Rousseau (Ph.D. 08/2010-2016 with Gertraud Burger, Université de Montréal)
Décodage de l'expression de gènes cryptiques
- Manuel Belmadani (M.C.S 2012-2016)
MotifGP: DNA Motif Discovery Using Multiobjective Evolution
- Julien Horwoord (Summer intern 2015)
Python implementation of Fast Text Searching for Regular Expressions on Tries
- Aseel Awdeh (M.Sc. 2013–2015
co-supervision with T. Perkins)
The Potential Power of Dynamics in Epistasis Analysis.
- Alexander Gawronski (M.Sc. 2011-2013)
RiboFSM: Frequent Subgraph Mining for the Discovery of RNA Structures and Interactions
- Victor Hugo Sperle Campos (Undergraduate student
from Brazil, 2013-05 - 2013-07)
Multiple Protein Sequence Alignment, Tree Length,
Median String Problem, Asymmetrical Substitution Score.
- Oksana Korol (M.Sc. 2009-2011)
ModuleInducer: Automating the Extraction of Knowledge from Biological Sequences
- Etienne Elie (Ph.D. 2006–2011 at Université de
Montréal under the supervision
of Abedl
Hakim Hafid, and Jacques Ferland)
Approche efficace pour la conception des architectures multiprocesseurs sur
puce électronique.
- Misha Jiline (Ph.D. 2006-2010 co-supervision with S. Matwin):
Annotation Concept Synthesis and Enrichment Analysis: a Logic-Based Approach to the Interpretation of High-Throughput Biological Experiments
-
Ghada Badr (Postdoc 2009/05-2011/08, co-supervised with David Sankoff)
Component-based matching for multiple interacting
RNA sequences
- Predrag Mizdrak (M.Sc. 2009 co-supervision with
Stéphane
Aris-Brosou):
Iterative likelihood methods for sequence
alignment and phylogenetic trees inference.
- Sivakumar Kannan (Postdoc 04/2008-10/2008 with Gergraud Burger, Université de Montréal)
RNA sequence and structure motif discovery in Diplonema papillatum
- Stephen Baird (Ph.D. 2006 - co-supervision with
R. Korneluk & M. Holcik at the ARC)
Searching for IRES.
- Amelia Bellamy-Royds (Undergraduate Research Project Summer 2006)
Progressive simultaneous alignment and structure prediction of
multiple RNA sequences.
- Mohammad Anwar (M.Sc. 2006)
Implementation and evaluation of scoring schemes for the automated
discovery of nucleic acid structures.
- Mohak Shah (Ph.D. 2006 - co-supervision with M. Marchand)
Sample Compression, Margin and Generalization: Extensions to the Set Covering Machine.
- Beeta Masoumi (M.Sc. 2005)
Simultaneous Alignment and Secondary Structure Prediction of RNA Sequences.
- Truong Nguyen (M.Sc. 2004)
Efficient Determination of Concensus Secondary Structures in RNA.
- Chunfang Zheng (NSERC Undergraduate Research Project 2003)
Java implemenation of covariation tests and a graphical user interface
for the study of protein contacts.
- Victor Jin (M.Sc. 2003)
A Computational Approach to the Analysis of Localized Interspersed
Motifs in Complete Genomic Sequences.
- See
also the Honours projects' page for further
information